Colwell RR, Grimes DJ. Semantic and Strategies. In: Colwell RR, editor. Nonculturable microorganisms in the environment. Berlin: Springer Science and Business Media Press; 2012. pp. 1-7. [
Link]
Hugenholtz P. Exploring prokaryotic diversity in the genomic era. Genome Biol. 2002;3(2):reviews0003.1-reviews0003.8. [
Link]
Von Wintzingerode F, Gobel UB, Stackebrandt E. Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev. 1997;21(3):213-29. [
Link] [
DOI:10.1111/j.1574-6976.1997.tb00351.x]
Vaz-Moreira I, Egas C, Nunes OC, Manaia CM. Culture-dependent and culture-independent diversity surveys target different bacteria: A case study in a freshwater sample. Antonie Van Leeuwenhoek. 2011;100(2):245-57. [
Link] [
DOI:10.1007/s10482-011-9583-0]
Rastogi G, Sani RK. Molecular Techniques to assess microbial community structure, function and dynamics in the environment. In: Ahmad I, Ahmad F, Pichtel J, editors. Microbes and microbial technology. New York: Springer; 2011. pp. 7931-5. [
Link] [
DOI:10.1007/978-1-4419-7931-5_2]
Papke RT, Douady CJ, Doolittle WF, Rodríguez-Valera F. Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern. Environ Microbiol. 2003;5(11):1039-45. [
Link] [
DOI:10.1046/j.1462-2920.2003.00501.x]
Pasić L, Bartual SG, Ulrih NP, Grabnar M, Velikonja BH. Diversity of halophilic archaea in the crystallizers of an Adriatic solar saltern. FEMS Microbiol Ecol. 2005;54(3):491-8. [
Link] [
DOI:10.1016/j.femsec.2005.06.004]
Shand RF, Betlach MC. Bop gene cluster expression in bacteriorhodopsin-overproducing mutants of halobacterium halobium. J Bacreriol. 1994;176(6):1655-60. [
Link] [
DOI:10.1128/jb.176.6.1655-1660.1994]
Benlloch S, Acinas SG, Antón J, López-López A, Luz SP, Rodríguez-Valera F. Archaeal biodiversity in crystallizer ponds from a solar saltern: Culture versus PCR. Microb Ecol. 2001;41(1):12-19. [
Link]
DeLong EF. Archaea in coastal marine environments. Proc Natl Acad Sci USA. 1992;89(12):5685-9. [
Link] [
DOI:10.1073/pnas.89.12.5685]
Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA. 1985;82(20):6955-9. [
Link] [
DOI:10.1073/pnas.82.20.6955]
Turner S, Pryer KM, Miao VP, Palmer JD. Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. J Eukaryot Microbiol. 1999;46(4):327-38. [
Link] [
DOI:10.1111/j.1550-7408.1999.tb04612.x]
Larkin MA1, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, et al. Clustal W and Clustal X version 2.0. Bioinformatics. 2007;23(21):2947-8. [
Link] [
DOI:10.1093/bioinformatics/btm404]
Hall TA. BioEdit: A user-friendly biological sequence alignment editor andanalysis program for Windows 95/98/NT. Nucleic Acids Symposium Series. 1999;41:95-8. [
Link]
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 2013;30(12):2725-9. [
Link] [
DOI:10.1093/molbev/mst197]
Felsenstein J. Confidence limits on phylogenies: An approach using bootstrap. Evolution. 1985;39(4):783-91.
https://doi.org/10.2307/2408678 [
Link] [
DOI:10.1111/j.1558-5646.1985.tb00420.x]
Pham VH, Kim J. Cultivation of unculturable soil bacteria. Trends Biotechnol. 2012;30(9):475-84. [
Link] [
DOI:10.1016/j.tibtech.2012.05.007]
Kaeberlein T, Lewis K, Epstein SS. Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment. Science. 2002;296(5570):1127-9. [
Link] [
DOI:10.1126/science.1070633]
Vreeland RH, editor. Advances in understanding the biology of halophilic microorganisms. New York: Springer; 2012. 1-33. [
Link] [
DOI:10.1007/978-94-007-5539-0]
Mehrshad M, Amoozegar MA, Yakhchali B, Shahzedeh Fazeli A. Biodiversity of moderately halophilic and halotolerant bacteria in the western coastal line of Urmia lake. 2012;1(2):49-70. [Persian] [
Link]
Asadi Asl B, Amouzegar MA. Study of variety of extreme aerobic halophyte prokaryotes on the west coast of Lake Uromieh using by dependent and independent cultivated methods. [Dissertation]. Tehran: University of Tehran; 2012. [Persian] [
Link]
Makhdoumi-Kakhki A, Amoozegar MA, Kazemi B, Pašić L, Ventosa A. Prokaryotic diversity in Aran-Bidgol salt lake, the largest hypersaline playa in Iran. Microbes Environ. 2012;27(1):87-93. [
Link] [
DOI:10.1264/jsme2.ME11267]
18-Alain K, Querellou J. Cultivating the uncultured: Limits, advances and future challenges. Extremophiles. 2009;13(4):583-94. [
Link] [
DOI:10.1007/s00792-009-0261-3]
Hughes JB, Hellmann JJ, Ricketts TH, Bohannan BJ. Counting the uncountable: Statistical approaches to estimating microbial diversity. Appl Environ Microbiol. 2001;67(10):4399-406. [
Link] [
DOI:10.1128/AEM.67.10.4399-4406.2001]
