Lung Cancer Diagnosis from histopathological images using deep learning approaches

Document Type : Original Research

Authors

1 Biophysics Dept. Faculty of Biological Sciences, Tarbiat Modares University

2 Dept. of Biophysics, Faculty of Biological Science Tarbiat Modares University

3 Dept. of electrical and information technology, IROST

Abstract
Cancer is one of the leading causes of death worldwide. Breast cancer is the most common cancer among women and causes a high number of annual deaths. The most reliable method for successful cancer management is accurate and early diagnosis. On the other hand, the lack of timely diagnosis leads to the spread of cancer in the body, making it difficult to treat and control. The gold standard method for breast cancer diagnosis is biopsy. Usually, visual inspection and manual assesement are used to diagnose cancer, where the pathologist examines the histopathology slides under a microscope which is error-prone and time- consuming procedure and requires years of expertise. Therefore, computer-aided diagnosis is essential to help physicians improve the efficiency of interpreting medical images. In this study, we use deep learning models, especially convolutional neural networks (CNNs) to detect whether or not histopathological images are cancerous. The AUC, Precision and F1-score obtained using the pre-trained Incetion-V3 deep neural network are 98.36%, 95.28% and,97.25% respectively, and the same parameters for the pre-trained ResNet-18 deep neural network are equal to 97.90 %, 97.46% and 98.22%. The presented models are able to provide reliable diagnosis results for different morphologies of breast tissues.

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[1] A. Aloyayri and A. Krzyżak, “Breast Cancer Classification from Histopathological Images Using Transfer Learning and Deep Neural Networks,” in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2020. doi: 10.1007/978-3-030-61401-0_45.
[2] M. H. Forouzanfar et al., “Global, regional, and national comparative risk assessment of 79 behavioural, environmental and occupational, and metabolic risks or clusters of risks in 188 countries, 1990-2013: A systematic analysis for the Global Burden of Disease Study 2013,” Lancet, vol. 386, no. 10010, 2015, doi: 10.1016/S0140-6736(15)00128-2.
[3] R. L. Siegel, K. D. Miller, and A. Jemal, “Cancer statistics, 2020,” CA. Cancer J. Clin., vol. 70, no. 1, 2020, doi: 10.3322/caac.21590.
[4] K. Das, S. Conjeti, J. Chatterjee, and D. Sheet, “Detection of Breast Cancer from Whole Slide Histopathological Images Using Deep Multiple Instance CNN,” IEEE Access, vol. 8, 2020, doi: 10.1109/ACCESS.2020.3040106.
[5] Z. Hameed, S. Zahia, B. Garcia-Zapirain, J. J. Aguirre, and A. M. Vanegas, “Breast cancer histopathology image classification using an ensemble of deep learning models,” Sensors (Switzerland), vol. 20, no. 16, 2020, doi: 10.3390/s20164373.
[6] A. Echle, N. T. Rindtorff, T. J. Brinker, T. Luedde, A. T. Pearson, and J. N. Kather, “Deep learning in cancer pathology: a new generation of clinical biomarkers,” British Journal of Cancer, vol. 124, no. 4. 2021. doi: 10.1038/s41416-020-01122-x.
[7] B. E. Bejnordi et al., “Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer,” JAMA - J. Am. Med. Assoc., vol. 318, no. 22, 2017, doi: 10.1001/jama.2017.14585.
[8] J. Xu, X. Luo, G. Wang, H. Gilmore, and A. Madabhushi, “A Deep Convolutional Neural Network for segmenting and classifying epithelial and stromal regions in histopathological images,” Neurocomputing, vol. 191, 2016, doi: 10.1016/j.neucom.2016.01.034.
[9] A. Janowczyk and A. Madabhushi, “Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases,” J. Pathol. Inform., vol. 7, no. 1, 2016, doi: 10.4103/2153-3539.186902.
[10] G. Nagarajan, R. I. Minu, B. Muthukumar, V. Vedanarayanan, and S. D. Sundarsingh, “Hybrid Genetic Algorithm for Medical Image Feature Extraction and Selection,” in Procedia Computer Science, 2016. doi: 10.1016/j.procs.2016.05.192.
[11] N. Nabizadeh and M. Kubat, “Brain tumors detection and segmentation in MR images: Gabor wavelet vs. statistical features,” Comput. Electr. Eng., vol. 45, 2015, doi: 10.1016/j.compeleceng.2015.02.007.
[12] S. M. McKinney et al., “International evaluation of an AI system for breast cancer screening,” Nature, vol. 577, no. 7788, 2020, doi: 10.1038/s41586-019-1799-6.
[13] F. A. Spanhol, L. S. Oliveira, C. Petitjean, and L. Heutte, “A Dataset for Breast Cancer Histopathological Image Classification,” IEEE Trans. Biomed. Eng., vol. 63, no. 7, 2016, doi: 10.1109/TBME.2015.2496264.
[14] N. Bayramoglu, J. Kannala, and J. Heikkila, “Deep learning for magnification independent breast cancer histopathology image classification,” in Proceedings - International Conference on Pattern Recognition, 2016. doi: 10.1109/ICPR.2016.7900002.
[15] Z. Han, B. Wei, Y. Zheng, Y. Yin, K. Li, and S. Li, “Breast Cancer Multi-classification from Histopathological Images with Structured Deep Learning Model,” Sci. Rep., vol. 7, no. 1, 2017, doi: 10.1038/s41598-017-04075-z.
[16] E. Deniz, A. Şengür, Z. Kadiroğlu, Y. Guo, V. Bajaj, and Ü. Budak, “Transfer learning based histopathologic image classification for breast cancer detection,” Heal. Inf. Sci. Syst., vol. 6, no. 1, 2018, doi: 10.1007/s13755-018-0057-x.
[17] K. Fan, S. Wen, and Z. Deng, “Deep Learning for Detecting Breast Cancer Metastases on WSI,” in Smart Innovation, Systems and Technologies, 2019. doi: 10.1007/978-981-13-8566-7_13.
[18] H. Hashemzadeh, S. Shojaeilangari, A. Allahverdi, M. Rothbauer, P. Ertl, and H. Naderi-Manesh, “A combined microfluidic deep learning approach for lung cancer cell high throughput screening toward automatic cancer screening applications,” Sci. Rep., vol. 11, no. 1, 2021, doi: 10.1038/s41598-021-89352-8.
[19] C. Szegedy, V. Vanhoucke, S. Ioffe, J. Shlens, and Z. Wojna, “Rethinking the Inception Architecture for Computer Vision,” in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2016. doi: 10.1109/CVPR.2016.308.
[20] K. He, X. Zhang, S. Ren, and J. Sun, “Deep residual learning for image recognition,” in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2016. doi: 10.1109/CVPR.2016.90.
[21] M. Sokolova and G. Lapalme, “A systematic analysis of performance measures for classification tasks,” Inf. Process. Manag., vol. 45, no. 4, 2009, doi: 10.1016/j.ipm.2009.03.002.
[22] D. G. Lowe, “Object recognition from local scale-invariant features,” in Proceedings of the IEEE International Conference on Computer Vision, 1999. doi: 10.1109/iccv.1999.790410.
[23] R. M. Haralick, I. Dinstein, and K. Shanmugam, “Textural Features for Image Classification,” IEEE Trans. Syst. Man Cybern., vol. SMC-3, no. 6, 1973, doi: 10.1109/TSMC.1973.4309314.
[24] T. Ojala, M. Pietikäinen, and T. Mäenpää, “Multiresolution gray-scale and rotation invariant texture classification with local binary patterns,” IEEE Trans. Pattern Anal. Mach. Intell., vol. 24, no. 7, 2002, doi: 10.1109/TPAMI.2002.1017623.
[25] S. Zahia, M. B. Garcia Zapirain, X. Sevillano, A. González, P. J. Kim, and A. Elmaghraby, “Pressure injury image analysis with machine learning techniques: A systematic review on previous and possible future methods,” Artificial Intelligence in Medicine, vol. 102. 2020. doi: 10.1016/j.artmed.2019.101742.