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Showing 2 results for Gharaghani
Farshid Shirafkan, Sajjad Gharaghani,
Volume 13, Issue 2 (1-2023)
Abstract
Moonlight proteins are a subset of multifunctional proteins in which more than one independent or usually distinct function occurs in a single polypeptide chain. Analyzing the interactive networks of proteins in the cell makes it possible to understand how complex processes cause disease. With the help of systems biology, larger and more complex systems can be studied, and the molecular basis of several diseases can be considered. The proteins of the human organism that are moonlight are mostly involved in cancer, anemia, and neurodegeneration. In this work, we created a subnet according to the human PPI network, in which the nodes, the proteins that cause the three selected diseases, and the edges, are the connection of these proteins with each other. We measured the power of the indirect effects of non-disease mediators between the three disease groups and identified key disease-binding intermediate proteins. The results show the relationship between mediator role and centrality and between mediator role and functional properties of these proteins. We have shown that a protein that plays a key indirect mediator between two diseases is not necessarily a hub in the PPI network. Therefore, as hub proteins are considered, intermediate proteins should be considered. We have observed that the mediators between anemia and neurodegeneration diseases are functionally important in the cell. The mediator proteins suggested herein should be experimentally tested as hypothetical disease-related proteins.
Volume 15, Issue 7 (Supplementary Issue - 2013)
Abstract
The response of plants to drought stress depends on several factors including the plant developmental stage and the length and severity of the stress applied. Common bean (Phaseolus vulgaris L.) is the most important pulse crop that is cultivated worldwide for human consumption. Understanding of the mechanisms responsible for its response to drought is, therefore, essential. An increasing number of reports show that withdrawal of water from plants growing in the controlled conditions is accompanied by changes in the expression of a number of genes. To our knowledge, regulation of gene expression in flower buds of P. vulgaris under stress conditions has not been reported. Our aim was to identify transcription sensitivity of CA7 and NCED genes under water deficit stress at vegetative and reproductive stages of different bean genotypes. Two experiments were carried out. Within each experiment, the groups of drought-stressed plants were subjected to water withholding, while the control plants were watered every other day. Stressed plants were re-irrigated when RWC reached 66±2 percent. Our study showed that CA7 and NCDE were genes differentially expressed in the studied genotypes under drought stress. The expression of these genes was strongly induced in response to drought stress in flower buds of the cultivar Jules and the line KS-21191. It seems that under stress conditions, these genes express more in the tolerant than the susceptible genotypes. Therefore, these two genes could probably be used to obtain plants relatively tolerant to water deficit stress, especially in the reproductive stage of plant growth.