Lysinibacillus sp.: a suitable candidate for producing calcite and studying the efficiency of its bio-cementation potential

Document Type : Original Research

Authors

Department of Biology, Faculty of Science, Shahid Chamran University of Ahvaz, Ahvaz, Iran

Abstract
The process of soil and concrete cementation through microbial induction depends on the efficiency of the enzymes in producing bacteria. The isolation of microorganisms with high urease activity may lead to the isolation of strains that are better at cementing in compression to the current strains. This research deals with the isolation of isolates with high urease ability. Isolate 233 out of 283 isolates was associated with the best urease activity, and its urease activity was the release of 5.04 micromoles of ammonium per millilitre per minute. This isolate using sequencing of a fragment of 16SrRNA and characterization of biochemical properties was identified as Lysinibacillus sp. strain 233 was deposited in NCBI under accession number OQ379213. The semi-quantitative XRD analysis of the bacterium's calcite crystals in the precipitation medium revealed that 87.1% were calcite while only 12.9% were vaterite. FESEM electron microscope images revealed cubic calcite crystals and EDX analysis confirmed the presence of its constituent elements, i.e., carbon, oxygen, and calcium.

Keywords

Subjects


1. Behzadipour, H., Pakbaz, M. S. and Ghezelbash, G. R. (2019) Effects of biocementation on strength parameters of silty and clayey sands. Bioinspired, Biomim. Nanobiomaterials. 9, 24-32.
2. Khodadadi Tirkolaei, H. and Bilsel, H. (2015) Statistical modeling of environmental factors on microbial urea hydrolysis process for biocement production. Adv. Mater. Sci. 2015, 340930
3. Gomez, M. G., Graddy, C. M., DeJong, J. T. and Nelson, D. C. (2019) Biogeochemical changes during bio-cementation mediated by stimulated and augmented ureolytic microorganisms. Sci. Rep. 9, 1-5.
4. Sarda, D., Choonia, H. S., Sarode, D. D. and Lele, S. S. (2009) Biocalcification by Bacillus pasteurii urease: a novel application. J. Ind. Microbiol. Biotechnol. 36, 1111-1115.
5. Lauchnor, E. G., Topp, D. M., Parker, A. E. and Gerlach, R. (2015) Whole cell kinetics of ureolysis by Sporosarcina pasteurii. J. Appl. Microbiol. 118, 1321-1332.
6. Ng, W. S., Lee, M. L. and Hii, S. L. (2012) An overview of the factors affecting microbial-induced calcite precipitation and its potential application in soil improvement. Int. J. Civ. Environ. Eng. 6, 188-94.
7. Chahal, N., Rajor, A. and Siddique, R. (2011) Calcium carbonate precipitation by different bacterial strains. Afr. J. Biotechnol. 10, 8359-72.
8. Nasfi, Z., Busch, H., Kehraus, S., Linares-Otoya, L., König, G. M., Schäberle, T. F. and Bachoual, R. (2018) Soil bacteria isolated from tunisian arid areas show promising antimicrobial activities against gram-negatives. Front. Microbiol. 9, 2742.
9. Eaton, A. D., Clesceri, L. S. and Greenberg, A. E. (2014) Standard methods: for the examination of water and wastewater. Water Environment Federation, Virginia, United States, pp 5-35.
10. Stabnikov, V., Jian, C., Ivanov, V. and Li, Y. (2013) Halotolerant, alkaliphilic urease-producing bacteria from different climate zones and their application for biocementation of sand. World J. Microbiol. Biotechnol. 29, 1453-60.
11. Gat, D., Tsesarsky, M., Shamir, D., and Ronen, Z. (2014). Accelerated microbial induced CaCO3 precipitation in a defined coculture of ureolytic and non-ureolytic bacteria. Biogeosciences, 11(10), 2561.
12. Whiffin, V. S., Van Paassen, L. A. and Harkes, M. P. (2007) Microbial carbonate precipitation as a soil improvement technique. Geomicrobiol. J. 24, 417-423.
13. Leeprasert, L., Chonudomkul, D. and Boonmak, C. (2022) Biocalcifying potential of ureolytic bacteria isolated from soil for biocementation and material crack repair. Microorganisms. 10, 963.
14. Ghezelbash, G. R. and Haddadi, M. (2018) Production of nanocalcite crystal by a urease producing halophilic strain of Staphylococcus saprophyticus and analysis of its properties by XRD and SEM. World J. Microbiol. Biotechnol. 34, 1-10.
15- Brenner, D. J., Krieg, N. R., Staley, J. T. and Garrity, G. M. (2005) Bergey’s manual of systematic bacteriology, vol 2. Springer, New York, pp 392–420.
16. Li, W., Liu, L.P., Zhou, P.P., Cao, L., Yu, L.J. and Jiang, S.Y. (2011). Calcite precipitation induced by bacteria and bacterially produced carbonic anhydrase. Curr. Sci. 100, 502-508.
17. Nakano, H., Takenishi, S. and Watanabe, Y. (1984) Purification and properties of urease from Brevibacterium ammoniagenes. Agric. Biol. Chem. 48, 1495-1502.
18. Abdel-Aleem, H., Dishisha, T., Saafan, A., AbouKhadra, A. A. and Gaber, Y. (2019) Biocementation of soil by calcite/aragonite precipitation using Pseudomonas azotoformans and Citrobacter freundii derived enzymes. RSC Adv. 31, 17601-17611.
19. Whiffin, V. S. (2004) Microbial CaCO3 precipitation for the production of biocement. Doctoral dissertation, Murdoch University.
20. Mobley, H. L. and Hausinger, R. P. (1989) Microbial ureases: significance, regulation, and molecular characterization. Microbiol. Rev. 53, 85-108.