Modares Journal of Biotechnology

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Keyword Index
A
  • Aedes mosquito Dengue fever disease: diagnosis, treatment and control strategies [Volume 16, Issue 1, 2025, Pages 123-140]
  • Alectinib Investigation of molecular interactions and structural stability of ALK tyrosine kinase inhibitors: A molecular dynamics simulation study [Volume 16, Issue 3, 2025, Pages 30-41]
  • Alfalfa Molecular Identification of Seed Accessions Using Bulk Seed Samples: A Case Study on Alfalfa [Volume 16, Issue 1, 2025, Pages 92-111]
  • Alteribacillus bidgolensis Cloning, Recombinant Expression and Evaluation of Biochemical Properties of Glutaminase from native strain Alteribacillus bidgolensis [Volume 16, Issue 3, 2025, Pages 42-56]
  • Anaplastic lymphoma kinase (ALK) Investigation of molecular interactions and structural stability of ALK tyrosine kinase inhibitors: A molecular dynamics simulation study [Volume 16, Issue 3, 2025, Pages 30-41]
  • Antibiotic کارایی ترکیبات ضدمیکروبی طبیعی و شیمیایی در کنتر [Volume 16, Issue 3, 2025, Pages 57-71]
  • Antimicrobial pepide Theoretical Design via Umbrella Sampling and Experimental Investigation of a New Mutation in Cap37 to Increase its Antibacterial Property [Volume 16, Issue 2, 2025, Pages 30-41]
B
  • Bacillus Investigating the frequency of α-amylase enzyme production in Microorganisms screened from Iran and Iranian microbial collection centers [Volume 16, Issue 3, 2025, Pages 1-18]
  • Bacteria Electrospinning polyurethane nanocomposite reinforced by graphene oxide, selenium nanoparticles and henna extract for wound dressing applications [Volume 16, Issue 1, 2025, Pages 35-50]
  • Bacteria کارایی ترکیبات ضدمیکروبی طبیعی و شیمیایی در کنتر [Volume 16, Issue 3, 2025, Pages 57-71]
  • Bioinformatics Molecular modeling of the photoprotein mnemopsin chimeric (PMC): with a structural and functional recovery approach of the EF-hand II loop [Volume 16, Issue 4, 2025]
  • Biological -scaffold The time, Biological scaffolds and Bioreactors; Pivotal operators in 3D Hybridoma cell culture and monoclonal antibody production [Volume 16, Issue 3, 2025, Pages 72-87]
  • Bioluminescence Molecular modeling of the photoprotein mnemopsin chimeric (PMC): with a structural and functional recovery approach of the EF-hand II loop [Volume 16, Issue 4, 2025]
  • Biomarker Design and simulation of mRNA-9 interpreted in lung cancer using hydrogel platform [Volume 16, Issue 2, 2025, Pages 75-90]
  • Biomass Genome-scale metabolic network modeling of aerobic and anaerobic methanotrophs, and comparing their efficiency, aims to achieve maximum biomass to provide livestock and poultry feed [Volume 16, Issue 4, 2025]
  • Biosensor Biosensor Design for Detection of IL-6 as an Inflammatory Marker Using Omniphobic Surfaces [Volume 16, Issue 4, 2025]
  • Biotechnology A review on microfluidics applications in biotechnology [Volume 16, Issue 4, 2025]
  • Blood pressure estimation Using Deep Supervised UNet Network for Continuous Estimation of Blood Pressure Based on Photoplethysmography Signal [Volume 16, Issue 1, 2025, Pages 18-34]
  • Bulk seed Molecular Identification of Seed Accessions Using Bulk Seed Samples: A Case Study on Alfalfa [Volume 16, Issue 1, 2025, Pages 92-111]
C
  • Calcite Lysinibacillus sp.: a suitable candidate for producing calcite and studying the efficiency of its bio-cementation potential [Volume 16, Issue 1, 2025, Pages 112-122]
  • Cancer Phytochemical based nano drug delivery systems for cancer treatment: present and future [Volume 16, Issue 1, 2025, Pages 51-72]
  • Cap37 protein Theoretical Design via Umbrella Sampling and Experimental Investigation of a New Mutation in Cap37 to Increase its Antibacterial Property [Volume 16, Issue 2, 2025, Pages 30-41]
  • Chitosan Design and simulation of mRNA-9 interpreted in lung cancer using hydrogel platform [Volume 16, Issue 2, 2025, Pages 75-90]
  • Citric acid "Authenticity assessment of lemon juice by determination of major organic acids using enzymatic method [Volume 16, Issue 4, 2025]
  • Cloning Cloning, Recombinant Expression and Evaluation of Biochemical Properties of Glutaminase from native strain Alteribacillus bidgolensis [Volume 16, Issue 3, 2025, Pages 42-56]
  • Cobalt-ferrite magnetic nanoparticle Synthesis and Evaluation of Cobalt Ferrite Nanoparticles with Dual MRI Contrast Properties [Volume 16, Issue 4, 2025]
  • Colorectal cancer Reconstruction of the microbiota-metabolite interaction network and investigation of metabolites and biological pathways of microbiota in colorectal cancer [Volume 16, Issue 1, 2025, Pages 73-91]
  • Control Dengue fever disease: diagnosis, treatment and control strategies [Volume 16, Issue 1, 2025, Pages 123-140]
  • CRISPR Design of guide RNA for CRISPR-Cas12-based detection of Salmonella typhimurium [Volume 16, Issue 2, 2025, Pages 91-104]
  • Cryopreservation Investigations on various methods for cryopreservation of Echium amoenum Seeds [Volume 16, Issue 4, 2025]
  • Cumin essential oil کارایی ترکیبات ضدمیکروبی طبیعی و شیمیایی در کنتر [Volume 16, Issue 3, 2025, Pages 57-71]
D
  • Dengue virus Dengue fever disease: diagnosis, treatment and control strategies [Volume 16, Issue 1, 2025, Pages 123-140]
  • Difficult-to-transfect cells Stable GFP transduction of hard-to-transfect mouse macrophage RAW264.7 cells by a second-generation lentiviral vector [Volume 16, Issue 2, 2025, Pages 58-74]
  • Disease Diagnosis A review on microfluidics applications in biotechnology [Volume 16, Issue 4, 2025]
  • D-Isocitric acid "Authenticity assessment of lemon juice by determination of major organic acids using enzymatic method [Volume 16, Issue 4, 2025]
  • Docking Design, modeling, docking and molecular dynamics simulation of a fusion peptide with the ability to bind to the growth factor of bone morphogenetic proteins. [Volume 16, Issue 2, 2025, Pages 17-29]
  • Drug delivery Synthesis of polymersome nanoparticles as carriers of podophyllotoxin bioactive compound with a proposed application against liver cancer [Volume 16, Issue 1, 2025, Pages 1-17]
  • Drug delivery Phytochemical based nano drug delivery systems for cancer treatment: present and future [Volume 16, Issue 1, 2025, Pages 51-72]
  • Dual T1 and T2 contrast agent Synthesis and Evaluation of Cobalt Ferrite Nanoparticles with Dual MRI Contrast Properties [Volume 16, Issue 4, 2025]
  • Dysbiosis Reconstruction of the microbiota-metabolite interaction network and investigation of metabolites and biological pathways of microbiota in colorectal cancer [Volume 16, Issue 1, 2025, Pages 73-91]
E
  • Echium amoenum Investigations on various methods for cryopreservation of Echium amoenum Seeds [Volume 16, Issue 4, 2025]
  • EGFR Wild-Type Molecular Stability Assessment of Second-Generation EGFR Inhibitors in Interaction with Wild-Type Protein: A Molecular Dynamics Simulation Study [Volume 16, Issue 3, 2025, Pages 19-29]
  • Electrospinning Electrospinning polyurethane nanocomposite reinforced by graphene oxide, selenium nanoparticles and henna extract for wound dressing applications [Volume 16, Issue 1, 2025, Pages 35-50]
F
  • Feature Extraction Designing a hybrid structure based on deep learning to predict phosphorylation sites [Volume 16, Issue 3, 2025, Pages 102-113]
  • Ferroptosis Structural changes and cell membrane permeability during ferroptosis: A molecular dynamics simulation study [Volume 16, Issue 2, 2025, Pages 1-16]
  • Fluorescence Investigating the effect of electric dipole of antiparallel alpha helices on the structure and function of photoprotein Mnemiopsin 2 [Volume 16, Issue 2, 2025, Pages 105-122]
G
  • Genetic identification Molecular Identification of Seed Accessions Using Bulk Seed Samples: A Case Study on Alfalfa [Volume 16, Issue 1, 2025, Pages 92-111]
  • Germplasm Investigations on various methods for cryopreservation of Echium amoenum Seeds [Volume 16, Issue 4, 2025]
  • Growth Factor Design, modeling, docking and molecular dynamics simulation of a fusion peptide with the ability to bind to the growth factor of bone morphogenetic proteins. [Volume 16, Issue 2, 2025, Pages 17-29]
H
  • Heat-induced unfolding Investigating the effect of electric dipole of antiparallel alpha helices on the structure and function of photoprotein Mnemiopsin 2 [Volume 16, Issue 2, 2025, Pages 105-122]
  • Heparin Design, modeling, docking and molecular dynamics simulation of a fusion peptide with the ability to bind to the growth factor of bone morphogenetic proteins. [Volume 16, Issue 2, 2025, Pages 17-29]
  • Hybridoma cell The time, Biological scaffolds and Bioreactors; Pivotal operators in 3D Hybridoma cell culture and monoclonal antibody production [Volume 16, Issue 3, 2025, Pages 72-87]
I
  • Identification Dengue fever disease: diagnosis, treatment and control strategies [Volume 16, Issue 1, 2025, Pages 123-140]
  • Interleukin-6 Biosensor Design for Detection of IL-6 as an Inflammatory Marker Using Omniphobic Surfaces [Volume 16, Issue 4, 2025]
L
  • Lab-on-a-chip A review on microfluidics applications in biotechnology [Volume 16, Issue 4, 2025]
  • Latent space Prediction of human-virus protein-protein interaction using heterogeneous siamese neural network [Volume 16, Issue 2, 2025, Pages 42-57]
  • Lentiviral vector Stable GFP transduction of hard-to-transfect mouse macrophage RAW264.7 cells by a second-generation lentiviral vector [Volume 16, Issue 2, 2025, Pages 58-74]
  • L- glutaminase Cloning, Recombinant Expression and Evaluation of Biochemical Properties of Glutaminase from native strain Alteribacillus bidgolensis [Volume 16, Issue 3, 2025, Pages 42-56]
  • Lime juice "Authenticity assessment of lemon juice by determination of major organic acids using enzymatic method [Volume 16, Issue 4, 2025]
  • Liver cancer Synthesis of polymersome nanoparticles as carriers of podophyllotoxin bioactive compound with a proposed application against liver cancer [Volume 16, Issue 1, 2025, Pages 1-17]
  • Lysinibacillus sp Lysinibacillus sp.: a suitable candidate for producing calcite and studying the efficiency of its bio-cementation potential [Volume 16, Issue 1, 2025, Pages 112-122]
M
  • Machine learning Using Deep Supervised UNet Network for Continuous Estimation of Blood Pressure Based on Photoplethysmography Signal [Volume 16, Issue 1, 2025, Pages 18-34]
  • Magnetic resonance imaging (MRI) Synthesis and Evaluation of Cobalt Ferrite Nanoparticles with Dual MRI Contrast Properties [Volume 16, Issue 4, 2025]
  • Membrane modeling Structural changes and cell membrane permeability during ferroptosis: A molecular dynamics simulation study [Volume 16, Issue 2, 2025, Pages 1-16]
  • Metabolic network modeling Genome-scale metabolic network modeling of aerobic and anaerobic methanotrophs, and comparing their efficiency, aims to achieve maximum biomass to provide livestock and poultry feed [Volume 16, Issue 4, 2025]
  • Metagenomics Reconstruction of the microbiota-metabolite interaction network and investigation of metabolites and biological pathways of microbiota in colorectal cancer [Volume 16, Issue 1, 2025, Pages 73-91]
  • Methanotrophs Genome-scale metabolic network modeling of aerobic and anaerobic methanotrophs, and comparing their efficiency, aims to achieve maximum biomass to provide livestock and poultry feed [Volume 16, Issue 4, 2025]
  • Microbiome Reconstruction of the microbiota-metabolite interaction network and investigation of metabolites and biological pathways of microbiota in colorectal cancer [Volume 16, Issue 1, 2025, Pages 73-91]
  • Microbiota Reconstruction of the microbiota-metabolite interaction network and investigation of metabolites and biological pathways of microbiota in colorectal cancer [Volume 16, Issue 1, 2025, Pages 73-91]
  • Microfluidic technology A review on microfluidics applications in biotechnology [Volume 16, Issue 4, 2025]
  • Micro-RNA biosensor Design and simulation of mRNA-9 interpreted in lung cancer using hydrogel platform [Volume 16, Issue 2, 2025, Pages 75-90]
  • Microsatellite Molecular Identification of Seed Accessions Using Bulk Seed Samples: A Case Study on Alfalfa [Volume 16, Issue 1, 2025, Pages 92-111]
  • MIC test Theoretical Design via Umbrella Sampling and Experimental Investigation of a New Mutation in Cap37 to Increase its Antibacterial Property [Volume 16, Issue 2, 2025, Pages 30-41]
  • MMPBSA Investigation of molecular interactions and structural stability of ALK tyrosine kinase inhibitors: A molecular dynamics simulation study [Volume 16, Issue 3, 2025, Pages 30-41]
  • MMPBSA Analysis Molecular Stability Assessment of Second-Generation EGFR Inhibitors in Interaction with Wild-Type Protein: A Molecular Dynamics Simulation Study [Volume 16, Issue 3, 2025, Pages 19-29]
  • Mnemiopsin 2 Investigating the effect of electric dipole of antiparallel alpha helices on the structure and function of photoprotein Mnemiopsin 2 [Volume 16, Issue 2, 2025, Pages 105-122]
  • MOI Stable GFP transduction of hard-to-transfect mouse macrophage RAW264.7 cells by a second-generation lentiviral vector [Volume 16, Issue 2, 2025, Pages 58-74]
  • Molecular dynamic simulation Theoretical Design via Umbrella Sampling and Experimental Investigation of a New Mutation in Cap37 to Increase its Antibacterial Property [Volume 16, Issue 2, 2025, Pages 30-41]
  • Molecular dynamics simulation Structural changes and cell membrane permeability during ferroptosis: A molecular dynamics simulation study [Volume 16, Issue 2, 2025, Pages 1-16]
  • Molecular dynamics simulation Design, modeling, docking and molecular dynamics simulation of a fusion peptide with the ability to bind to the growth factor of bone morphogenetic proteins. [Volume 16, Issue 2, 2025, Pages 17-29]
  • Molecular dynamics simulation Molecular Stability Assessment of Second-Generation EGFR Inhibitors in Interaction with Wild-Type Protein: A Molecular Dynamics Simulation Study [Volume 16, Issue 3, 2025, Pages 19-29]
  • Molecular marker Molecular Identification of Seed Accessions Using Bulk Seed Samples: A Case Study on Alfalfa [Volume 16, Issue 1, 2025, Pages 92-111]
  • Monoclonal -antibody The time, Biological scaffolds and Bioreactors; Pivotal operators in 3D Hybridoma cell culture and monoclonal antibody production [Volume 16, Issue 3, 2025, Pages 72-87]
  • Mutant Investigating the effect of electric dipole of antiparallel alpha helices on the structure and function of photoprotein Mnemiopsin 2 [Volume 16, Issue 2, 2025, Pages 105-122]
  • Mutated peptide Theoretical Design via Umbrella Sampling and Experimental Investigation of a New Mutation in Cap37 to Increase its Antibacterial Property [Volume 16, Issue 2, 2025, Pages 30-41]
  • Mutation Molecular modeling of the photoprotein mnemopsin chimeric (PMC): with a structural and functional recovery approach of the EF-hand II loop [Volume 16, Issue 4, 2025]
N
  • Nano Phytochemical based nano drug delivery systems for cancer treatment: present and future [Volume 16, Issue 1, 2025, Pages 51-72]
  • Nanocomposite Electrospinning polyurethane nanocomposite reinforced by graphene oxide, selenium nanoparticles and henna extract for wound dressing applications [Volume 16, Issue 1, 2025, Pages 35-50]
  • Nanoparticles Investigating the possibility of bioabsorption along with the production of lead and tellurite nanoparticles by Shinella Zoogloeoides DSM287 bacteria [Volume 16, Issue 3, 2025, Pages 88-101]
  • Neratinib Molecular Stability Assessment of Second-Generation EGFR Inhibitors in Interaction with Wild-Type Protein: A Molecular Dynamics Simulation Study [Volume 16, Issue 3, 2025, Pages 19-29]
  • Non-invasive technique Using Deep Supervised UNet Network for Continuous Estimation of Blood Pressure Based on Photoplethysmography Signal [Volume 16, Issue 1, 2025, Pages 18-34]
P
  • Peptide fusion Design, modeling, docking and molecular dynamics simulation of a fusion peptide with the ability to bind to the growth factor of bone morphogenetic proteins. [Volume 16, Issue 2, 2025, Pages 17-29]
  • Photoplethysmography signal Using Deep Supervised UNet Network for Continuous Estimation of Blood Pressure Based on Photoplethysmography Signal [Volume 16, Issue 1, 2025, Pages 18-34]
  • Plasma membrane Structural changes and cell membrane permeability during ferroptosis: A molecular dynamics simulation study [Volume 16, Issue 2, 2025, Pages 1-16]
  • Polymersome Synthesis of polymersome nanoparticles as carriers of podophyllotoxin bioactive compound with a proposed application against liver cancer [Volume 16, Issue 1, 2025, Pages 1-17]
  • Polyurethane Electrospinning polyurethane nanocomposite reinforced by graphene oxide, selenium nanoparticles and henna extract for wound dressing applications [Volume 16, Issue 1, 2025, Pages 35-50]
  • Predictor Designing a hybrid structure based on deep learning to predict phosphorylation sites [Volume 16, Issue 3, 2025, Pages 102-113]
  • ProtBert Prediction of human-virus protein-protein interaction using heterogeneous siamese neural network [Volume 16, Issue 2, 2025, Pages 42-57]
  • Protein phosphorylation Designing a hybrid structure based on deep learning to predict phosphorylation sites [Volume 16, Issue 3, 2025, Pages 102-113]
  • Protein-Protein Interaction Prediction of human-virus protein-protein interaction using heterogeneous siamese neural network [Volume 16, Issue 2, 2025, Pages 42-57]
  • PVS2 Investigations on various methods for cryopreservation of Echium amoenum Seeds [Volume 16, Issue 4, 2025]
R
  • RAW264.7 Stable GFP transduction of hard-to-transfect mouse macrophage RAW264.7 cells by a second-generation lentiviral vector [Volume 16, Issue 2, 2025, Pages 58-74]
S
  • Salmonella Design of guide RNA for CRISPR-Cas12-based detection of Salmonella typhimurium [Volume 16, Issue 2, 2025, Pages 91-104]
  • SCP Genome-scale metabolic network modeling of aerobic and anaerobic methanotrophs, and comparing their efficiency, aims to achieve maximum biomass to provide livestock and poultry feed [Volume 16, Issue 4, 2025]
  • Screening Investigating the frequency of α-amylase enzyme production in Microorganisms screened from Iran and Iranian microbial collection centers [Volume 16, Issue 3, 2025, Pages 1-18]
  • Second-Generation EGFR Inhibitors Molecular Stability Assessment of Second-Generation EGFR Inhibitors in Interaction with Wild-Type Protein: A Molecular Dynamics Simulation Study [Volume 16, Issue 3, 2025, Pages 19-29]
  • Shinella zoogloeoides Investigating the possibility of bioabsorption along with the production of lead and tellurite nanoparticles by Shinella Zoogloeoides DSM287 bacteria [Volume 16, Issue 3, 2025, Pages 88-101]
  • Siamese neural network Prediction of human-virus protein-protein interaction using heterogeneous siamese neural network [Volume 16, Issue 2, 2025, Pages 42-57]
  • SSR Molecular Identification of Seed Accessions Using Bulk Seed Samples: A Case Study on Alfalfa [Volume 16, Issue 1, 2025, Pages 92-111]
  • Streptavidin-FITC Design and simulation of mRNA-9 interpreted in lung cancer using hydrogel platform [Volume 16, Issue 2, 2025, Pages 75-90]
  • Structural recovery Molecular modeling of the photoprotein mnemopsin chimeric (PMC): with a structural and functional recovery approach of the EF-hand II loop [Volume 16, Issue 4, 2025]
T
  • Thermodynamics Investigating the effect of electric dipole of antiparallel alpha helices on the structure and function of photoprotein Mnemiopsin 2 [Volume 16, Issue 2, 2025, Pages 105-122]
  • Transduction Stable GFP transduction of hard-to-transfect mouse macrophage RAW264.7 cells by a second-generation lentiviral vector [Volume 16, Issue 2, 2025, Pages 58-74]
  • Transfection Stable GFP transduction of hard-to-transfect mouse macrophage RAW264.7 cells by a second-generation lentiviral vector [Volume 16, Issue 2, 2025, Pages 58-74]
  • Transformer Prediction of human-virus protein-protein interaction using heterogeneous siamese neural network [Volume 16, Issue 2, 2025, Pages 42-57]
  • Treatment Dengue fever disease: diagnosis, treatment and control strategies [Volume 16, Issue 1, 2025, Pages 123-140]
  • Trypan blue Investigating the frequency of α-amylase enzyme production in Microorganisms screened from Iran and Iranian microbial collection centers [Volume 16, Issue 3, 2025, Pages 1-18]
U
  • Urease activity Lysinibacillus sp.: a suitable candidate for producing calcite and studying the efficiency of its bio-cementation potential [Volume 16, Issue 1, 2025, Pages 112-122]
W
  • Wound Dressing Electrospinning polyurethane nanocomposite reinforced by graphene oxide, selenium nanoparticles and henna extract for wound dressing applications [Volume 16, Issue 1, 2025, Pages 35-50]
X
  • XRD Lysinibacillus sp.: a suitable candidate for producing calcite and studying the efficiency of its bio-cementation potential [Volume 16, Issue 1, 2025, Pages 112-122]